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A collection of utilities for manipulating data and calculating inter-annotator agreement in brat annotation files.

Short code to do some simple indexing of UMLS.

Self user registration flask app. Built to be deployed on cheaha (rc.uab.edu)

In preparation for the data movement, to install Parsync and test on our dev platform.

PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics

A mediawiki graphic theme for UAB using the vector skin. Compatible with mediawiki-1.19 (maybe later) with a few visual glitches on tab support. Compatibility with current releases needs to be confirmed.

Puppet Users module for RCS. Note, this module is an example of the old way, future version of this module will move all user data into Hiera (or even better ldap) to keep the module free of UAB internal data.